# This file is part of EAP. # # EAP is free software: you can redistribute it and/or modify # it under the terms of the GNU Lesser General Public License as # published by the Free Software Foundation, either version 3 of # the License, or (at your option) any later version. # # EAP is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU Lesser General Public License for more details. # # You should have received a copy of the GNU Lesser General Public # License along with EAP. If not, see . import operator import math import random from deap import algorithms from deap import base from deap import creator from deap import tools from deap import gp # Define new functions def safeDiv(left, right): try: return left / right except ZeroDivisionError: return 0 pset = gp.PrimitiveSet("MAIN", 1) pset.addPrimitive(operator.add, 2) pset.addPrimitive(operator.sub, 2) pset.addPrimitive(operator.mul, 2) pset.addPrimitive(safeDiv, 2) pset.addPrimitive(operator.neg, 1) pset.addPrimitive(math.cos, 1) pset.addPrimitive(math.sin, 1) pset.addEphemeralConstant(lambda: random.randint(-1,1)) pset.renameArguments({"ARG0" : "x"}) creator.create("FitnessMin", base.Fitness, weights=(-1.0,)) creator.create("Individual", gp.PrimitiveTree, fitness=creator.FitnessMin, pset=pset) toolbox = base.Toolbox() toolbox.register("expr", gp.genRamped, pset=pset, min_=1, max_=2) toolbox.register("individual", tools.initIterate, creator.Individual, toolbox.expr) toolbox.register("population", tools.initRepeat, list, toolbox.individual) toolbox.register("lambdify", gp.lambdify, pset=pset) def evalSymbReg(individual): # Transform the tree expression in a callable function func = toolbox.lambdify(expr=individual) # Evaluate the sum of squared difference between the expression # and the real function : x**4 + x**3 + x**2 + x values = (x/10. for x in xrange(-10,10)) diff_func = lambda x: (func(x)-(x**4 + x**3 + x**2 + x))**2 diff = sum(map(diff_func, values)) return diff, toolbox.register("evaluate", evalSymbReg) toolbox.register("select", tools.selTournament, tournsize=3) toolbox.register("mate", gp.cxUniformOnePoint) toolbox.register("expr_mut", gp.genFull, min_=0, max_=2) toolbox.register('mutate', gp.mutUniform, expr=toolbox.expr_mut) def main(): random.seed(318) pop = toolbox.population(n=300) hof = tools.HallOfFame(1) stats = tools.Statistics(lambda ind: ind.fitness.values) stats.register("avg", tools.mean) stats.register("std", tools.std) stats.register("min", min) stats.register("max", max) algorithms.eaSimple(pop, toolbox, 0.5, 0.1, 40, stats, halloffame=hof) return pop, stats, hof if __name__ == "__main__": main()